Glossary
a
A2A receptors (also known as A2A and A2A receptor)
signalling molecule found on brain cells and blocked by caffeine
AAV
a virus that can be used to deliver gene therapy drugs to cells. AAV stands for adeno-associated virus.
acetyl
a chemical tag that can be added to proteins or removed from them
aggregate (also known as aggregates)
Lumps of protein that form inside cells in Huntington’s disease and some other degenerative diseases
Allele
one of the two copies of a gene
alpha-1 (also known as alpha-1-antitrypsin)
a protein which is faulty in a genetic disease called alpha-1-antitrypsin deficiency, which affects the lived and lungs
amino acid (also known as amino acids)
the building blocks that proteins are made from
Amygdala
A small brain area, in the temporal lobe, important for emotions and response to fear.
amyloid
The main protein that builds up in the brains of Alzheimer’s disease patients
anti-sense (also known as anti-sense strand)
the half of the DNA double-helix that is mostly used as a backup, but sometimes produces message molecules
Antioxidant
a chemical that can ‘mop up’ harmful chemicals produced when cells release energy from food
apoptosis
A type of cell death where the cell uses specialized signals to kill itself
ASOs (also known as Antisense oligonucleotides, Antisense oligonucleotide, and ASO)
A type of gene silencing treatment in which specially designed DNA molecules are used to switch off a gene
axon (also known as axons)
long extensions of neurons, that act like electrical wires to carry signals in the nervous system.
b
BAC
an abbreviation for ‘bacterial artificial chromosome’
BACE1
The gene for a protein called beta secretase 1, which thought to be involved in the development of Alzheimer’s disease
BACHD (also known as BAC-HD)
a mouse model of Huntington’s disease that develops symptoms slowly. BAC stands for bacterial artificial chromosome, referring to the way the HD gene was put into the mouse.
BDNF
brain-derived neurotrophic factor: a growth factor that may be able to protect neurons in HD
biomarker
a test of any kind - including blood tests, thinking tests and brain scans - that can measure or predict the progression of a disease like HD. Biomarkers may make clinical trials of new drugs quicker and more reliable.
blood-brain barrier
A natural barrier, made from reinforcements to blood vessels, that prevents many chemicals from getting into the brain from the bloodstream
bone marrow
The gooey stuff in the middle of bones, that manufactures blood cells. When eaten, gives dogs a healthy coat and vitality
c
caffeine
stimulant chemical found in tea, coffee and soft drinks like cola
CAG repeat
The stretch of DNA at the beginning of the HD gene, which contains the sequence CAG repeated many times, and is abnormally long in people who will develop HD
Cas
The bit of a gene-editing system that cuts the DNA. It’s a type of protein called a nuclease. Cas is short for ‘CRISPR-associated’.
caspase inhibitor (also known as caspase inhibition)
A drug that reduces the activity of caspases, the enzymes that snip huntingtin protein up so it can enter the nucleus and cause problems
CED
convection-enhanced delivery, a way of using pressure to spread drugs further in the brain
cervix
the neck of the uterus (womb)
chaperone (also known as chaperones)
chaperone proteins help other proteins to fold correctly, and can protect proteins against damage
chorea
Involuntary, irregular ‘fidgety’ movements that are common in HD
chorionic villus sampling (also known as CVS)
A medical procedure used to get a sample of DNA from a developing baby during pregnancy. A needle passed through the skin of the abdomen, or through the cervix, is used to collect tissue from the placenta.
chromosomes
Long strings of genes, tightly coiled into packages of DNA inside cells. Each cell’s DNA is stored as 46 chromosomes. The HD gene is on chromosome 4. Each chromosome has two copies, one inherited from each parent.
cilia
Hair-like protrusions on the surface of cells
circadian
a circadian rhythm is something that repeats every day, like the body’s sleep-wake cycle
clinical trial
Very carefully planned experiments designed to answer specific questions about how a drug affects human beings
coenzyme-Q10
a nutritional supplement that has some anti-oxidant properties
cohort
a group of participants in a clinical research study
CRISPR (also known as CRISPR/CAS9)
A system for editing DNA in precise ways
cross-sectional study
A study where each participant is looked at only once - unlike in a longitudinal study, where each participant is looked at several times over a time period
CSF (also known as cerebrospinal fluid)
A clear fluid produced by the brain, which surrounds and supports the brain and spinal cord.
Cyclic-AMP
a chemical found in neurons that responds to stimulation and is important for learning and memory
Cyclic-GMP
a chemical found in neurons that responds to stimulation and is important for learning and memory
cytokine
a signalling chemical of the immune system
cytoplasm
A part of a cell including everything inside the cell and outside the nucleus; where most of the cell’s work happens
d
deep brain stimulation (also known as DBS)
direct stimulation of the brain using electrical impulses through tiny wires.
dendritic cell (also known as dendritic cells)
A type of cell that comes from bone marrow and is part of the immune system
differentiate (also known as differentiation)
differentiation is the process of one cell type turning into another cell type.
DNA fingerprinting
a method of discovering what chromosome came from what parent or grandparent, without testing for the HD genetic mutation.
dominant
A genetic condition that only requires one copy of a mutation to occur
dopamine
A signaling chemical (neurotransmitter) involved in movement control, mood and motivation
dystonia
sustained involuntary muscle contractions, a bit like chorea but lasting longer
e
efficacy
A measure of whether a treatment works or not
embryo (also known as embryos)
the earliest stage during the development of a baby, when it consists of just a few cells
Endoplasmic Reticulum
part of the cell that, among other things, stores excess calcium
enteric nervous system
The collective name for the neurons found in the stomach and intestines.
ependymal cells
Cells that line the cavities of the brain
excitotoxic (also known as excitotoxicity)
the death of neurons due to overstimulation
exclusion testing
an optional add-on to prenatal testing, where DNA from parents and grandparents is compared with the DNA of the embryo or fetus. Exclusion testing means that the at-risk parent doesn’t have to have an HD genetic test to have HD-free children.
Exons (also known as exon and Exon)
The small fraction of our DNA that is directly used to instruct cells how to make proteins
exosome (also known as exosomes)
Tiny bubble-like particles produced by cells that can transfer chemicals to other cells
expression profiling (also known as gene expression profiling)
a technique that allows measurement of the activation levels of many thousands of genes at once
f
fetus
a developing baby in the womb
Food and Drug Administration
The government regulatory authority in the US responsible for approving new drugs
frontotemporal dementia
a degenerative brain disease that can cause problems with speech and behavior
g
GABA
A chemical the brain uses to signal ‘slow down’ from one brain cell to another
Ganglioside
a type of fat with important roles in the brain, decreased in HD patient brains
GDNF
glial cell-derived neurotrophic factor: a growth factor that protects neurons in Parkinson’s Disease, and maybe HD
gene silencing
An approach to treating HD that uses targeted molecules to tell cells not to produce the harmful huntingtin protein
genetic engineering
A technique used by scientists to alter the genes (DNA) of an animal or other organism, so that its cells produce different proteins and behave differently
genome
the name given to all the genes that contain the complete instructions for making a person or other organism
Genome Editing
The use of zinc-finger nucleases to make changes in DNA. ‘Genome’ is a word for all the DNA we each have.
glossary
These popups will explain any technical terms we have to use.
glutamate
a signalling chemical in the brain, or ‘neurotransmitter’
glutamine
the amino acid building block that is repeated too many times at the beginning of the mutant huntingtin protein
growth factor
chemicals produced by the brain that help neurons to survive
h
HDAC (also known as histone de-acetylase and HDACs)
histone de-acetylases (HDACs) are machines that remove acetyl tags from histones, causing them to release the DNA they’re attached to
heat shock response
a defensive strategy that cells can activate when in danger or under stress. The heat shock response includes the production of more chaperone proteins, to help protect other proteins.
hippocampus
the seahorse-shaped part of the brain that’s crucial for memory
histone (also known as histones)
special proteins that our DNA wraps around to stabilize and protect it
hormone (also known as hormones)
Chemical messengers, produced by glands and released into the blood, that alter how other parts of the body behave
HTT
one abbreviation for the gene that causes Huntington’s disease. The same gene is also called HD and IT-15
HTTAS
the anti-sense (backwards) version of the HTT gene
huntingtin protein
The protein produced by the HD gene.
Hydrophilic
‘water loving’ - chemicals that mix well with water are hydrophilic
Hydrophobic
‘water hating’ - chemicals that do not mix well with water are hydrophobic
hypothalamus
A tiny brain region with important roles in controlling the body’s hormones and metabolism
i
In vitro fertilization (also known as IVF and in-vitro fertilization)
A medical procedure where eggs and sperm are combined in the laboratory, then embryos are implanted in the mother’s womb.
induced pluripotent stem cells (also known as IPS cells)
Stem cells that have been grown from adult cells.
inflammation
Activation of the immune system, thought to be involved in the HD disease process
insulin
A hormone that regulates the body’s use of sugar and fats, and many other aspects of metabolism
intermediate allele
A copy of the huntingtin gene with a CAG-repeat length that never leads to disease for the carrier, but may place the carriers children at some risk of HD.
intermediate alleles
HD genes with CAG lengths between 27-35, which do not result in HD symptoms, but are longer than normal. Intermediate alleles are thought to be at risk of expanding in the offspring of people who carry them.
interventional
A study in which an experimental drug or treatment is given to volunteers
intracranial volume
An MRI measurement that reflects the largest size a brain ever achieves
j
JM6
an experimental drug that is converted by the body into Ro-61, which inhibits the enzyme KMO
juvenile HD (also known as JHD)
Huntington’s disease where symptoms begin before the age of 20.
k
kinase
A protein whose job it is to add a specific kind of chemical tag to other proteins. Kind of like a stapler.
KMO
kynurenine mono-oxygenase, an enzyme that controls the balance of harmful and protective chemicals resulting from the breakdown of proteins
knock-in
an organism that has had one of its genes altered, for example by adding a long CAG repeat into the huntingtin gene.
knockout
a form of genetic engineering in animals are bred to lack a chosen gene
kynurenic acid (also known as Kyna)
kynurenic acid, a chemical produced naturally in the brain that can protect neurons from harmful over-stimulation
kynurenine
a chemical similar to kynurenic acid (Kyna)
l
leptin
A hormone that regulates appetite
longitudinal study
A study where each participant is looked at several times over a time period - unlike a cross-sectional study, where each participant is looked at only once
m
magnetic resonance (also known as MRI)
A technique using powerful magnetic fields to produce detailed images of the brain in living humans and animals
manifest
after HD diagnosis, or when symptoms are already showing
medium spiny neuronmedium spiny neurons
brain cells in the striatum that are most damaged early in HD
Melatonin
a hormone produced by the pineal gland, important for regulating sleep
Mesenchmal
mesenchymal stem cells are cells with multiple functions that can be grown from adult bone marrow.
messenger RNA (also known as mRNA)
A message molecule, based on DNA, used by cells as the final set of instructions for making a protein.
meta-analysis
Combining the results of several different studies and analyzing them together, to increase their ability to answer a particular question.
metabolism
The process of cells taking in nutrients and turning them into energy and building blocks to build and repair cells.
Metabolite (also known as metabolites)
a chemical produced by cells as they break down fuels for energy
Metabolomics
the simultaneous measurement of many metabolites in a sample
methionine
one of the amino acid ‘building blocks’ that proteins are made from
microdialysis
a technique that enables researchers to measure the levels of chemicals in the living brain
microglia
the brain’s immune cells
mitochondria
tiny machines inside our cells that process fuel into energy, enabling cells to function
motor neuron disease
A progressive neurological disease in which motor (movement) neurons die. Also known as ALS or Lou Gehrig’s disease.
multiple sclerosis (also known as MS)
a disease of the brain and spinal cord, in which episodes of inflammation cause damage. Unlike Huntington’s disease, MS isn’t genetically inherited.
n
n-terminal fragment
A piece of a protein, like huntingtin, taken from the beginning of the protein.
neurodegenerative (also known as neurodegeneration)
A disease caused by progressive malfunctioning and death of brain cells (neurons)
neuron (also known as neurons)
Brain cells that store and transmit information
neuroprotection (also known as neuroprotective)
something that protects brain cells against damage
neutron (also known as neutrons)
Small sub-atomic particles that can be produced by some nuclear reactions and can help to study proteins in detail
Non-disclosure
an optional add-on to PGD, where an HD genetic test is performed on an at-risk parent but the result is kept secret. Non-disclosure PGD enables HD-free embryos to be implanted without the at-risk parent having to learn their HD status.
nucleotide bases
A single ‘letter’ of the genetic code, abbreviated A, T, G or C
nucleus
A part of the cell containing genes (DNA)
o
observational
A study in which measurements are made in human volunteers but no experimental drug or treatment is given
open label
A trial in which the patient and doctor know what drug is being used. Open label trials are susceptible to bias through placebo effects.
p
PACSIN
a normal protein that might be involved in helping huntingtin to function
Parkinson's Disease
A neurodegenerative disease that, like HD, involves motor coordination problems
PDE10
a brain protein that may be a good drug target and biomarker in Huntington’s disease. PDE10 is found almost exclusively in parts of the brain where brain cells die in HD.
peptides
Small pieces of protein that signal in the body from one cell to another
perseveration
The inability to to change thoughts or actions to match changed plans
phase III
The phase in the development of a new treatment where clinical trials are conducted using many patients, to determine whether the treatment is effective
phenylbutyrate
a ‘non-selective’ HDAC inhibitor that affects all HDACs without targeting any particular HDAC enzyme
phosphatase
A protein whose job it is to remove a specific kind of chemical tag from other proteins. Kind of like a staple remover.
Phosphodiesterase
a protein that breaks down cyclic-AMP and cyclic-GMP
pineal (also known as pineal gland)
a gland in the brain that produces the hormone melatonin
placebo
A placebo is a dummy medicine containing no active ingredients. The placebo effect is a psychological effect that causes people to feel better even if they’re taking a pill that doesn’t work.
placenta
the ‘afterbirth’, which supplies the fetus with oxygen and nutrients via the umbilical cord. The placenta’s DNA is the same as the fetus’s.
pluripotency
the ability of some cells to turn into different types of cell
polymerase chain reaction (also known as PCR)
PCR or the polymerase chain reaction is a scientific technique used to detect and amplify specific bits of DNA. It’s used in the process of genetic testing for Huntington;s disease.
PolyQ (also known as polyglutamine)
A description of HD and other diseases that are caused by abnormal expansion of stretches of DNA containing the sequence CAG repeated many times. Too many CAGs in a gene results in proteins with too many ‘glutamine’ building blocks, and glutamine is represented by the symbol Q.
pooping
Come on, you know what this one means
post-translational modification
the addition of small chemical tags to a protein after it has been synthesized. These tags often change the location or function of the tagged protein.
Pre-implantation genetic diagnosis (also known as PGD)
A technique for preventing HD from being passed to children. Eggs and sperm are combined in a laboratory, and the embryos are tested genetically for the mutation. Only embryos without it are implanted into the mother’s womb.
prenatal testing
A technique for preventing HD from being passed to children. A DNA sample is taken during pregnancy and tested genetically. If the HD mutation is found, the pregnancy is terminated.
prevalence
A figure estimating how many people there are in a particular population who have a certain medical condition.
primary endpoint
The main question asked in a clinical trial
primate
a group of mammal species including monkeys, apes and humans
prion (also known as prions)
special proteins that can become harmful, and cause disease called prion disease. Like falling dominoes, prion proteins can ‘infect’ other proteins, making them become harmful.
prodromal
prior to onset or diagnosis of movement symptoms
promoter
a special part of a gene devoted to turning the gene on and off
putamen
part of the striatum, a deep brain region important for movement control, that’s affected early in the course of HD.
q
quinolinic acid (also known as Quin)
quinolinic acid, a chemical produced naturally in the brain that can harm neurons by over-stimulating them
r
R6/2
a mouse model of Huntington’s disease. R6/2 mice have been genetically altered with an abnormal gene that makes them produce a harmful fragment of the mutant huntingtin protein
rabies
A virus that infects the brain
Receptor
a molecule on the surface of a cell that signalling chemicals attach to
recombinant
artificial DNA that has been stuck together from small pieces from different sources.
reduced penetrance allele
A copy of the huntingtin gene with a CAG-repeat length long enough to cause symptoms in some, but not all, people who carry it.
Rhes
a protein found in the brain regions damaged early in Huntington’s disease.
ribosome
A molecular machine that makes proteins using the genetic instructions in RNA message molecules
RNA
the chemical, similar to DNA, that makes up the ‘message’ molecules that cells use as working copies of genes, when manufacturing proteins.
RNA interference (also known as RNAi)
A type of gene silencing treatment in which specially designed RNA molecules are used to switch off a gene
Ro 61-8048 (also known as Ro-61)
an experimental drug that inhibits the enzyme KMO
Ryanodine Receptor
a pore that lets calcium enter cells
s
SAHA
an HDAC-inhibitor drug. Its full name is Suberoylanilide hydroxamic acid.
SBMA
Spinobulbar muscular atrophy, another neurodegenerative disease caused by increased CAG size
SCA
Spinocerebellar ataxia, another neurodegenerative disease caused by increased CAG size
secondary endpoints
Additional questions asked in a clinical trial that help scientists look at treated patients as broadly as they can to determine the effects of a drug
sense strand
the half of the DNA double-helix that contains instructions for most proteins. The ‘business’ strand.
significance testing
A method used by statisticians to try to decide whether the result of a study or trial is genuine or likely to have happened by chance
single nucleotide polymorphisms (also known as SNP)
a single-letter spelling difference in a gene. SNPs, pronounced ‘snips’, are common and most don’t change the function of the gene.
siRNA
A way of silencing genes using specially designed molecules of RNA – like DNA but made of only a single strand – that target the message molecules in cells and tell them not to make a certain protein
Sodium
A chemical element found abundantly on planet earth, in rocks, plants and animals (including humans). The main constituent of salt, AKA sodium chloride.
soma
the main cell body of a neuron, which contains the cell nucleus where genes (DNA) are located
somatic
relating to the body
spinocerebellar ataxia
A family of diseases which result in characteristic movement disorders. Many types of spinocerebellar ataxia are caused by the same type of mutation as HD – a CAG expansion.
splicing
the cutting up of RNA messages, to remove non-coding regions and join together coding regions.
statistically significant
Unlikely to have arisen by chance, according to a statistical test
stem cells
Cells that can divide into cells of different types
suprachiasmatic nucleus (also known as SCN)
the part of the brain that controls daily or ‘circadian’ rhythms
Synapse
the site of connection between two neurons in the brain
Synaptic transmission
The passage of messages between neurons at a synapse
synaptophysin
a protein essential for the formation of synapses, the connections between neurons.
t
therapeutics
treatments
Total Functional Capacity (also known as TFC)
A standardized rating scale for function in HD, used to assess capacity to work, handle finances, perform domestic chores and self-care tasks
TR-FRET
“Time Resolved Fluorescence Resonance Energy Transfer” - a sophisticated technique for measuring interactions between antibodies.
transcranial magnetic stimulation
applying magnetic fields to the brain to study its functioning
transcription
the first step in making a protein from the recipe stored in a gene. Transcription means making a working copy of the gene from RNA, a chemical messenger similar to DNA.
transcription factor
a gene-control protein. In response to signals from inside and outside cells, transcription factors attach to the DNA and cause specific genes to be more or less activated, producing more or less of the corresponding protein.
transcriptional dysregulation
disruption of the mechanisms that control the activation levels of different genes, leading to genes being wrongly activated or inactivated
transcriptional regulation
the mechanisms that control the activation levels of different genes
transgenic
an organism that has had an extra ‘foreign’ gene or genes inserted into its DNA.
trinucleotide repeat
A stutter in the genetic code that results in the repetition of a three ‘letter’ sequence
u
UHDRS
A standardized neurological examination that aims to provide a uniform assessment of the clinical features of HD
uterus
womb
v
Vascular system
the vessels and/or tissue that carry fluids like blood throughout the body
ventricle (also known as ventricles)
Normal fluid-filled spaces within the brain.
vesicle
a tiny ‘bubble’ produced by a cell that can deliver chemicals to other cells
w
Whole Exome Sequencing (also known as whole exome sequencing and Whole exome sequencing)
Decoding exons, the ~1.5% of a persons DNA which contains instructions for directly building proteins
Whole genome sequencing (also known as whole genome sequencing and Whole Genome Sequencing)
Decoding every one of the approximately 3 billion ‘letters’ of an individuals DNA
wild-type
the opposite of ‘mutant’. Wild-type huntingtin, for example, is the ‘normal’, ‘healthy’ protein.
y
YAC
an abbreviation for ‘yeast artificial chromosome’
YAC128
one of several mouse models of HD. YAC stands for “yeast artificial chromosome”.
z
Zinc-finger Nucleases
Molecular machines that attach to a specific DNA sequence and then cut the DNA strand